2026
Chevrier T, Cowart DA, Nieblas A-E, Chanut J, Bernard S, Bonhommeau S (2026). Feasibility of a Close-Kin Mark-Recapture for Stock Assessment of Indian Ocean Swordfish (Xiphias gladius). Fishes, 11030149. https://doi.org/10.3390/fishes11030149.
Chevrier T, Bonhommeau S, Thompson M, Farley J, Del Vecchio G, Nieblas A-E, Cowart DA, Imbert Nguyen J, Bernard S, Guiguen Y, Cabau C, Klopp C, Zoller JA, Horvath S, Brooke R, Lu AT and Pellegrini M (2026). Searching for shared epigenetic clocks: Evaluating ultra-conserved markers in a de novo genome assembly of the albacore tuna. Accepted in GeroScience.
2025
Cowart DA, Chevrier T, Nieblas A-E, Chanut J, Le Roux A, Duval M, Rungassamy T, Bernard S, Bonhommeau S (2025). Environmental DNA data provides taxa-specific insights into community differences across Reunion Island back-reef depressions. Regional Studies in Marine Science, 104642. https://doi.org/10.1016/j.rsma.2025.104642.
Contini M, Illien V, Julien M, Ravitchandirane M, Russias V, Lazennec A, Chevrier T, Rintz Cam Ly, Carpentier L, Gogendeau P, Leblanc C, Bernard S, Boyer A, Daudon JT, Poulain S, Barde J, Joly Z, Bonhommeau S (2025) Seatizen Atlas: a collaborative dataset of underwater and aerial marine imagery. Sci Data 12, 675. https://doi.org/10.1038/s41597-025-04974-1.
Gogendeau P, Bonhommeau S, Fourati H, Julien M, Contini M, Chevrier T, Nieblas, A-E, Bernard S (in press) An open-source Autonomous Surface Vehicle for Acoustic Tracking, Bathymetric and Photogrammetric Surveys. Ocean Engineering, 331, 121201. https://doi.org/10.1016/j.oceaneng.2025.121201.
2024
Chevrier T, Cowart DA, Nieblas A-E, Charrier G, Bernard S, Evano H, Brisset B, Chanut J, Bonhommeau S (2024). Population structure of the swordfish, Xiphias gladius, across the Indian Ocean using Next Generation Sequencing”. ICES Journal of Marine Science, fsae179, https://doi.org/10.1093/icesjms/fsae179
Cowart DA, Chevrier T, Nieblas A-E, Chanut J, Bernard S, Bonhommeau S (2024). Detecting local variations across metazoan communities in back-reef depressions of Reunion Island (Mascarene Archipelago) through environmental DNA survey. Frontiers in Marine Science, 11, 1423676. https://doi.org/10.3389/fmars.2024.1423676
2023
Thekiso K, Miya T, Cowart DA (2023). A preliminary study into the detection of fish environmental DNA in selected South African estuaries. African Journal of Aquatic Science, 48 (4), 393 – 403. https://doi.org/10.2989/16085914.2023.2288341
Nieblas A-E, Cowart DA (2023). Genetic analysis to inform the stock structure of Patagonian toothfish (Dissostichus eleginoides). Literature and data review, sampling strategy proposal, feasibility study,
sampling, laboratory, and shipping protocols. Southern Indian Ocean Fisheries Agreement (SIOFA) SER2022-TOP1 report.
2022
Cowart DA, Murphy KR, Cheng CHC (2022). Environmental DNA from marine waters and substrates: protocols for sampling and eDNA extraction. In: Verde, C, Giordano, D, (eds) Marine Genomics. Methods in Molecular Biology, vol 2498. Humana, New York, NY. 225 – 251. doi: 10.1007/978-1-0716-2313-8_11
Cowart, DA, Schiaparelli, S, Alvaro, MC, Cecchetto, M, Le Port AS, Jollivet, D, Hourdez, S (2022). Origin, diversity and biogeography of Antarctic scale worms (polychaeta : Polynoidae) : a wide-scale barcoding approach. Ecology and Evolution. 12 (7): e9093. https://doi.org/10.1002/ece3.9093
Nieblas A-E, Murua H, Fiorellato F and de Bruyn P, Chassot E, Juan Jorda M-J (2022) Pre-workshop analysis in preparation for the 2022 IOTC Ecoregions Workshop : “Identification of regions in the IOTC convention area to inform the implementation of the ecosystem approach to fisheries management” online, 19-21 January 2022.. IOTC-2022-WPEB18-INF01. In: IOTC Proceedings, Working Party for Ecosystems and Bycatch.
2021
Juan-Jordá M-J, Nieblas A-E, Murua H, Andonegi E, Kell L, Diaz G, Coelho R, Domingo A, Báez J, Hanke A (2021) Concept note for ICCAT Ecoregion Workshop “Identification of regions in the ICCAT convention area for supporting the implementation of ecosystem-based fisheries management”
Nieblas A-E, Bernard S, Big Game Fishing Réunion, Brisset B, Chanut J, Chevrier T, Coelho R, Colas Y, Jayanti AD, Evano H, Faure C, Hervé G, Kerzerho V, Rouyer T, Tracey S, Widyatmoko M, Bonhommeau S (2021) An update on satellite tagging of billfish around the Indian Ocean via the FLOPPED project. In: IOTC – 19th Working Party on Billfish. IOTC-2021-WPB19-12.
2020
Bonhommeau S, Chassot E, Barde J, de Bruyn P, Fiorellato F, Nelson L, Fu D, Nieblas A-E (2020) Preliminary Modelling for the Stock Assessment of Shortfin Mako Shark, Isurus oxyrinchus using CMSY and JABBA. In: IOTC – 16th Working Party on Ecosystems and Bycatch. IOTC-2020-WPEB16-17_Rev2.
2019
Bonhommeau S, Evano H, Huet J, Chapat M, Varenne F, Le Foulgoc L, Richard E, Tessier E, Chanut J, Nieblas A-E Brisset B (2019) Biometric data for large pelagic fish in the Indian Ocean
Nieblas A-E (2019) Towards improvement in monitoring, reporting and management of Fish Aggregating Devices in the Indian Ocean Purse Seine Tuna Fishery. IOTC-2019-WPEB15- 37. In: IOTC Proceedings, Working Party for Ecosystems and Bycatch.
Nieblas A-E, Juan Jorda M-J, Murua H, Fiorellato F and de Bruyn P (2019) Draft ecoregions for the IOTC convention area, proposed in preparation for the 2019 IOTC Ecoregions Workshop: “Identification of regions in the IOTC convention area to inform the implementation of the ecosystem approach to fisheries management”. IOTC-2019-WPEB15- INF02.In: IOTC Proceedings, Working Party for Ecosystems and Bycatch.
2018
Bonhommeau S, Evano H, Huet J, Le Foulgoc L,Richard E, Tessier E, Chanut J, Nieblas A-E (2018) Biometric and allometric relationships for large pelagic species collected in Reunion Island: contribution to an IOTC database? IOTC-2018-WPDCS14-28. In: IOTC Proceedings, Victoria, Seychelles, 29 November-1 December 2018.
Conferences, Symposiums & Workshops
2025
- 16th Working Party on Methods (WPM16) Indian Ocean Tune Commission (IOTC), Mahé, Seychelles
- 13th Western Indian Ocean Marine Science Association (WIOMSA) Scientific Symposium, Mombasa, Kenya
- 23rd Working Party on Billfish (WPB23) Indian Ocean Tune Commission (IOTC), Sète, France
- 9th Working Party on Temperate Tuna (WPTmT09) – Indian Ocean Tune Commission (IOTC), Mahé, Seychelles
2024
- 7th International Billfish Symposium, San Diego, CA, USA
2023
- 21st Working Party on Billfish (WPB23) – Indian Ocean Tune Commission (IOTC), La Réunion France
- Journées interdisciplinaires des sciences de la mer du Groupement de Recherche Océan et Mers (GdR OMER) meeting, Paris, France
2022
- Analysis and Bioinformatics for Marine Science (ABIMS) metabarcoding workshop, Roscoff, France